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EPySeg: a coding-free solution for automated segmentation of epithelia using deep learning

Benoit Aigouy, from the Prud’homme team, developed EPySeg, an open-source software that uses deep learning to segment membrane-stained epithelial tissues, from any organism, automatically and very efficiently.
Delphine Dauga
Delphine Dauga
Biocurator at Bioself
Date de publication

Benoit Aigouy, from the Prud’homme team, developed EPySeg, an open-source software that uses deep learning to segment membrane-stained epithelial tissues, from any organism, automatically and very efficiently. EPyseg, which can be used on a local computer, or in the cloud via Google Colab, will accelerate and improve the characterization of epithelial tissues for all developmental biologists interested in tissue-scale morphogenesis.

EPyseg illustration

To know more :

Development 2020 Dec 2;dev.194589. doi: 10.1242/dev.194589.

Contact

Benoit Aigouy – Benoit Aigouy
Benjamin Prud’homme – Benjamin.prudhomme@univ-amu.fr

 

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And yet it diffuses!

Free diffusion of Wnt ligands can polarize target cells at distance in C. elegans embryos.

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24/04/2024

And yet it diffuses!

Free diffusion of Wnt ligands can polarize target cells at distance in C. elegans embryos.